Procmail with Dovecot

Hey folks, here's a question. I want to enable procmail for the users so that they can have their incoming messages sorted info various folders and such regardless of MUA access or web access. I know I can set procmail to deliver to a maildir, but wouldn't that screw up dovecot's indexes? If it would, what can I do to ensure that the indexes stay correct?

Thanks!

-- Dan Egli On my Test server